PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10086_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 387aa    MW: 42866.4 Da    PI: 7.4244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10086_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12133171244
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 
                  r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L
  RrC10086_p1 133 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFL 171
                  889*************************9....8999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.9E-15130172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.252131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-12132172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10133171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.82E-10133179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEQQRVPKPE LSPPMMFTAA ASQQAGGGNE RNAVEENSNS NSSSNYGTVA SGGTKVTVFD  60
KYPFERFQFS LILSSQSFMD MLRSAKGTSQ DDDFDDEEDF VMKKESSSTS QMIHRDLRAR  120
GGGGNDQKLN TPRSKHSATE QRRRSKINDR FQMLRQLIPN SDQKRDKASF LLEEKTSKYE  180
TPYQGWNHDP AKLVNWQRNN QHLVPEGTVA FAPKLEEEKN NIPIPVLATT HGVVIDRPET  240
LNRATPTTGT VPLSAQSNSF LSPVIAGNPV THLHTRVAAS ETVEPSASSR NHTQPLKEEG  300
DDEEVHAGNI SISSVYSQGR LVKTLREALE NSGVDLTKAS ISVEIELAKQ SSSFKDHELR  360
GPVSRTGNDD DAKQSRKPKR LKTNNTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715669.10.0PREDICTED: transcription factor BIM1-like isoform X2
SwissprotQ9LEZ31e-152BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A078C1A00.0A0A078C1A0_BRANA; BnaA10g23230D protein
STRINGBra009322.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.61e-142bHLH family protein